On 14/03/2012 19:02, Rich Shepard wrote:

I assume the reason is that the region is a square.

Indeed.

What command could I pass to r.mapcalc that would clip
the raster map to the basins themselves

Define a MASK before running r.mapcalc
http://grass.osgeo.org/grass64/manuals/html64_user/r.mask.html

Hermann
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