Yes, not quite the right list, but I think you're out of luck anyways. R defines the compile flags and other details to use, and it's hard to override them. I gave up and used an old Mac with Snow Leopard to compile.
The problem is that Lion Xcode does not include GCC any more. clang is the main compiler, and R doesn't like it. There is a llvm-gcc that emulates the behavior of gcc, but R finds cc which is a symlink to clang (but configure scripts still identify it as gcc). I have rgdal on my framework download page, but it's a little old. I tend to forget about it, but I can update my rgdal if you can wait a bit. (hmm, maybe my rgdal doesn't work with your custom R?) If you really need to compile your own rgdal, one thing I haven't tried is creating a symlink to llvm-gcc and putting it in your PATH. I would NOT put it in /usr/local/bin, because that could interfere with software that does work with clang from the cc symlink. Maybe something like: mkdir ~/binllvm ln -s /usr/bin/llvm-gcc ~/binllvm/cc ln -s /usr/bin/llvm-g++ ~/binllvm/c++ export PATH="~/binllvm:$PATH" then compile/install rgdal in the same terminal window you ran the export. On Oct 31, 2012, at 6:41 PM, Marcello Benigno wrote: > Hi, > > I can't install rgdal library on Lion, tried this: > > > R CMD INSTALL > --configure-args='--with-gdal-config=/Library/Frameworks/GDAL.framework/unix/bin/gdal-config > --with-proj-include=/Library/Frameworks/PROJ.framework/unix/include > --with-proj-lib=/Library/Frameworks/PROJ.framework/unix/lib' > /Users/marcello/Downloads/rgdal_0.7-20.tar.gz > > > * installing to library > ‘/usr/local/Cellar/r/2.15.2/R.framework/Versions/2.15/Resources/library’ > > * installing *source* package ‘rgdal’ ... > > ** package ‘rgdal’ successfully unpacked and MD5 sums checked > > > configure: gdal-config: > /Library/Frameworks/GDAL.framework/unix/bin/gdal-config > > > checking gdal-config usability... yes > > configure: GDAL: 1.9.1 > > checking GDAL version > 1.5.4... yes > > checking for gcc... cc > > checking whether the C compiler works... yes > > checking for C compiler default output file name... a.out > > checking for suffix of executables... > > checking whether we are cross compiling... no > > checking for suffix of object files... o > > checking whether we are using the GNU C compiler... yes > > checking whether cc accepts -g... yes > > checking for cc option to accept ISO C89... none needed > > > checking how to run the C preprocessor... cc -E > > > checking for grep that handles long lines and -e... /usr/bin/grep > > > checking for egrep... /usr/bin/grep -E > > checking for ANSI C header files... rm: conftest.dSYM: is a directory > > rm: conftest.dSYM: is a directory > > yes > > checking for sys/types.h... yes > > checking for sys/stat.h... yes > > checking for stdlib.h... yes > > checking for string.h... yes > > checking for memory.h... yes > > checking for strings.h... yes > > checking for inttypes.h... yes > > checking for stdint.h... yes > > checking for unistd.h... yes > > checking gdal.h usability... yes > > checking gdal.h presence... yes > > checking for gdal.h... yes > > checking gdal: linking with --libs only... no > > checking gdal: linking with --libs and --dep-libs... no > > > clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior > is deprecated > > > gdal_test.c:5:1: error: C++ requires a type specifier for all declarations > > > main() { > > ^~~~ > > 1 error generated. > > clang: warning: treating 'c' input as 'c++' when in C++ mode, this behavior > is deprecated > > gdal_test.c:5:1: error: C++ requires a type specifier for all declarations > > main() { > > ^~~~ > > 1 error generated. > > configure: Install failure: compilation and/or linkage problems. > > > configure: error: GDALAllRegister not found in libgdal. > > > ERROR: configuration failed for package ‘rgdal’ > > > * removing > ‘/usr/local/Cellar/r/2.15.2/R.framework/Versions/2.15/Resources/library/rgdal’ > > > > Any Ideas? > > Thanks in advance. > -- > Marcello Benigno B. de Barros Filho > Prof. do Curso Superior de Tecnologia em Geoprocessamento - IFPB > Mestre em Ciências Geodésicas e Tecnologias da Geoinformação - UFPE > Doutorando em Tecnologia Ambiental e Recursos Hídricos - UFPE > http://profmarcello.blogspot.com > http://about.me/marcello.benigno > > _______________________________________________ > grass-user mailing list > grass-user@lists.osgeo.org > http://lists.osgeo.org/mailman/listinfo/grass-user ----- William Kyngesburye <kyngchaos*at*kyngchaos*dot*com> http://www.kyngchaos.com/ "History is an illusion caused by the passage of time, and time is an illusion caused by the passage of history." - Hitchhiker's Guide to the Galaxy _______________________________________________ grass-user mailing list grass-user@lists.osgeo.org http://lists.osgeo.org/mailman/listinfo/grass-user