Hi jencor808,
I can only recommend using SRTM for subbasin delineations. We are using it on a regular basis in our hydrological modelling working group. You'll have to play around with thresholds a little. I use different thresholds for different areas of my catchment (eg. in mountainous regions I'd want smaller subbasins). By masking those areas and run r.watershed several times, you can vary your thresholds and then patch the different subbasin rasters back together. As the r.watershed algorithm often leaves small areas at the edges uncovered, you'll have to fill those before or after patching, otherwise you'll have holes in your subbasin map. You can also get rid of small subbasins by converting your subbasin raster into a vector map and then run
v.clean remove small areas (check manual)

Hope it helps. I have got a python/GRASS script that is station-based that does the varying thresholds for you and all the cleaning etc. Let me know if you'd want to give that a try.
Regards,
Michel

On 08/16/2013 06:51 PM, jencor808 wrote:
Hello all~

I'm working with SRTM data and trying to produce watershed maps in Honduras.
For most of the country, the threshold seems to work great at 100000, but
this is not the case on the shore - those watersheds are neglected likely
due to their smaller scale. Does anyone have experience merging multiple
scales? Does this make sense? I'd rather not reduce my threshold or the
whole country because those watersheds seem too small.

As an aside, what do people think about using SRTM for watershed mapping in
the first place - given it is a surface model and not a DEM.





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