I upgraded to version 1.2.2 and the problem was solved during a few weeks 
but appeared again.
I figured out that I need to recalculate the index time ranges to get the 
job done, then it fails again. A query's details show that the wrong 
indexes are used :

{
  "query": "tags:\"foo, bar\"",
  "built_query": 
"{\"from\":0,\"size\":150,\"query\":{\"filtered\":{\"query\":{\"query_string\":{\"query\":\"tags:\\\"foo,
 
bar\\\"\",\"allow_leading_wildcard\":false}},\"filter\":{\"bool\":{\"must\":{\"range\":{\"timestamp\":{\"from\":\"*2015-11-30
 13:25:53.307*\",\"to\":\"*2015-11-30 
14:25:53.307*\",\"include_lower\":true,\"include_upper\":true}}}}}}},\"sort\":[{\"timestamp\":{\"order\":\"desc\"}}]}",
  "used_indices": [
    {
      "index_name": "graylog_68",
      "begin": "*2015-10-13T04:49:10.000Z*",
      "end": "*45785588-04-17T16:01:23.968Z*",
      "calculated_at": "2015-11-27T16:49:39.020Z",
      "took_ms": 549
    },
    {
      "index_name": "graylog_39",
      "begin": "*2015-09-20T04:25:09.000Z*",
      "end": "*47647-07-06T20:25:12.000Z*",
      "calculated_at": "2015-11-27T16:51:24.225Z",
      "took_ms": 1183
    },
    {
      "index_name": "graylog_59",
      "begin": "*2015-10-13T04:42:01.000Z*",
      "end": "*4580087-11-01T15:58:31.008Z*",
      "calculated_at": "2015-11-27T16:50:50.092Z",
      "took_ms": 353
    },
    {
      "index_name": "graylog_63",
      "begin": "*2015-10-11T04:25:15.000Z*",
      "end": "*47647-07-27T04:17:25.000Z*",
      "calculated_at": "2015-11-27T16:50:50.713Z",
      "took_ms": 586
    }
  ],
  "messages": [],
  "fields": [],
  "time": 6,
  "total_results": 0,
  "from": "*2015-11-30T13:25:53.314Z*",
  "to": "*2015-11-30T14:25:53.315Z*"
}


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