Hi,

I built the graylog fat-jar using:

mvn clean package assembly:single -DskipTests=true 

cd target/assembly
tar zxvf graylog-*-tarball.tar.gz
cd bin

I changed the /etc/graylog/server/server.conf as described in manual_setup 
guide 
<http://docs.graylog.org/en/latest/pages/installation/manual_setup.html>.
Now, when I try to run the server as:
./graylogctl start

I see the following in ../log/graylog-server.log:

2016-02-10 13:45:21,311 WARN : org.graylog2.shared.plugins.PluginLoader - 
Plugin directory ~/work/git/opensource/graylog2-server/plugin does not 
exist, not loading plugins.
2016-02-10 13:45:21,313 INFO : org.graylog2.bootstrap.CmdLineTool - Loaded 
plugins: []
2016-02-10 13:45:21,349 INFO : org.graylog2.bootstrap.CmdLineTool - Running 
with JVM arguments: -Djava.library.path=./../lib/sigar -Xms1g -Xmx1g 
-XX:NewRatio=1 -XX:+ResizeTLAB -XX:+UseConcMarkSweepGC 
-XX:+CMSConcurrentMTEnabled -XX:+CMSClassUnloadingEnabled -XX:+UseParNewGC 
-XX:-OmitStackTraceInFastThrow
2016-02-10 13:45:21,686 INFO : 
org.graylog2.shared.system.stats.SigarService - Failed to load SIGAR. 
Falling back to JMX implementations.
2016-02-10 13:45:22,483 INFO : org.graylog2.shared.buffers.InputBufferImpl 
- Message journal is enabled.
2016-02-10 13:45:22,627 INFO : org.graylog2.shared.buffers.InputBufferImpl 
- Message journal is enabled.
2016-02-10 13:45:22,634 ERROR: org.graylog2.shared.journal.KafkaJournal - 
Unable to start logmanager.
kafka.common.KafkaException: Failed to acquire lock on file .lock in 
~/work/git/opensource/graylog2-server/data/journal. A Kafka instance in 
another process or thread is using this directory.
at kafka.log.LogManager$$anonfun$lockLogDirs$1.apply(LogManager.scala:98) 
~[graylog.jar:?]
at kafka.log.LogManager$$anonfun$lockLogDirs$1.apply(LogManager.scala:95) 
~[graylog.jar:?]
at 
scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:241)
 
~[graylog.jar:?]
at 
scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:241)
 
~[graylog.jar:?]
at 
scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:34)
 
~[graylog.jar:?]
at scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:34) 
~[graylog.jar:?]
at scala.collection.TraversableLike$class.map(TraversableLike.scala:241) 
~[graylog.jar:?]
at scala.collection.AbstractTraversable.map(Traversable.scala:112) 
~[graylog.jar:?]
at kafka.log.LogManager.lockLogDirs(LogManager.scala:95) ~[graylog.jar:?]
at kafka.log.LogManager.<init>(LogManager.scala:57) ~[graylog.jar:?]
at org.graylog2.shared.journal.KafkaJournal.<init>(KafkaJournal.java:261) 
[graylog.jar:?]
at 
org.graylog2.shared.journal.KafkaJournal$$FastClassByGuice$$8f50433e.newInstance(<generated>)
 
[graylog.jar:?]
at 
com.google.inject.internal.cglib.reflect.$FastConstructor.newInstance(FastConstructor.java:40)
 
[graylog.jar:?]
at 
com.google.inject.internal.DefaultConstructionProxyFactory$1.newInstance(DefaultConstructionProxyFactory.java:61)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:105)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
 
[graylog.jar:?]
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
 
[graylog.jar:?]
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:56) 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
 
[graylog.jar:?]
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
 
[graylog.jar:?]
at com.google.inject.internal.InjectorImpl$2$1.call(InjectorImpl.java:1016) 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at com.google.inject.internal.InjectorImpl$2.get(InjectorImpl.java:1012) 
[graylog.jar:?]
at 
org.graylog2.shared.buffers.InputBufferImpl.<init>(InputBufferImpl.java:72) 
[graylog.jar:?]
at 
org.graylog2.shared.buffers.InputBufferImpl$$FastClassByGuice$$790e95b9.newInstance(<generated>)
 
[graylog.jar:?]
at 
com.google.inject.internal.cglib.reflect.$FastConstructor.newInstance(FastConstructor.java:40)
 
[graylog.jar:?]
at 
com.google.inject.internal.DefaultConstructionProxyFactory$1.newInstance(DefaultConstructionProxyFactory.java:61)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:105)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
 
[graylog.jar:?]
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
 
[graylog.jar:?]
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:56) 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
 
[graylog.jar:?]
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
 
[graylog.jar:?]
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:56) 
[graylog.jar:?]
at com.google.inject.internal.InjectorImpl$2$1.call(InjectorImpl.java:1016) 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at com.google.inject.internal.InjectorImpl$2.get(InjectorImpl.java:1012) 
[graylog.jar:?]
at 
com.google.inject.multibindings.Multibinder$RealMultibinder.get(Multibinder.java:375)
 
[graylog.jar:?]
at 
com.google.inject.multibindings.Multibinder$RealMultibinder.get(Multibinder.java:258)
 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderInternalFactory.provision(ProviderInternalFactory.java:81)
 
[graylog.jar:?]
at 
com.google.inject.internal.InternalFactoryToInitializableAdapter.provision(InternalFactoryToInitializableAdapter.java:53)
 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderInternalFactory.circularGet(ProviderInternalFactory.java:61)
 
[graylog.jar:?]
at 
com.google.inject.internal.InternalFactoryToInitializableAdapter.get(InternalFactoryToInitializableAdapter.java:45)
 
[graylog.jar:?]
at 
com.google.inject.internal.SingleFieldInjector.inject(SingleFieldInjector.java:54)
 
[graylog.jar:?]
at 
com.google.inject.internal.MembersInjectorImpl.injectMembers(MembersInjectorImpl.java:132)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:114)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
 
[graylog.jar:?]
at 
com.google.inject.internal.BoundProviderFactory.get(BoundProviderFactory.java:61)
 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
 
[graylog.jar:?]
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
 
[graylog.jar:?]
at 
com.google.inject.internal.InternalInjectorCreator$1.call(InternalInjectorCreator.java:205)
 
[graylog.jar:?]
at 
com.google.inject.internal.InternalInjectorCreator$1.call(InternalInjectorCreator.java:199)
 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1092) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalInjectorCreator.loadEagerSingletons(InternalInjectorCreator.java:199)
 
[graylog.jar:?]
at 
com.google.inject.internal.InternalInjectorCreator.injectDynamically(InternalInjectorCreator.java:180)
 
[graylog.jar:?]
at 
com.google.inject.internal.InternalInjectorCreator.build(InternalInjectorCreator.java:110)
 
[graylog.jar:?]
at com.google.inject.Guice.createInjector(Guice.java:96) [graylog.jar:?]
at 
org.graylog2.shared.bindings.Hk2GuiceBridgeJitInjector.create(Hk2GuiceBridgeJitInjector.java:60)
 
[graylog.jar:?]
at 
org.graylog2.shared.bindings.GuiceInjectorHolder.createInjector(GuiceInjectorHolder.java:32)
 
[graylog.jar:?]
at org.graylog2.bootstrap.CmdLineTool.setupInjector(CmdLineTool.java:377) 
[graylog.jar:?]
at org.graylog2.bootstrap.CmdLineTool.run(CmdLineTool.java:180) 
[graylog.jar:?]
at org.graylog2.bootstrap.Main.main(Main.java:44) [graylog.jar:?]
2016-02-10 13:45:22,654 INFO : com.mongodb.Mongo - Creating Mongo instance 
(driver version 2.14.1) with authority MongoAuthority{type=Direct, 
serverAddresses=[localhost:27017], credentials={credentials={}}} and 
options MongoOptions{description='null', connectionsPerHost=10, 
threadsAllowedToBlockForConnectionMultiplier=5, maxWaitTime=120000, 
connectTimeout=10000, socketTimeout=0, socketKeepAlive=false, 
autoConnectRetry=false, maxAutoConnectRetryTime=0, slaveOk=false, 
readPreference=primary, dbDecoderFactory=DefaultDBDecoder.DefaultFactory, 
dbEncoderFactory=DefaultDBEncoder.DefaultFactory, safe=false, w=0, 
wtimeout=0, fsync=false, j=false, 
socketFactory=javax.net.DefaultSocketFactory@2b556bb2, 
cursorFinalizerEnabled=true, writeConcern=WriteConcern { "getlasterror" : 
1} / (Continue on error? false), alwaysUseMBeans=false, 
requiredReplicaSetName=null}
2016-02-10 13:45:22,661 INFO : com.mongodb.driver.cluster - Cluster created 
with settings {hosts=[localhost:27017], mode=Single, 
requiredClusterType=Unknown}
2016-02-10 13:45:22,677 INFO : com.mongodb.driver.cluster - Cluster 
description not yet available. Waiting for 10000 ms before timing out
2016-02-10 13:45:22,694 INFO : com.mongodb.driver.cluster - Monitor thread 
successfully connected to server with description 
ServerDescription{address=localhost:27017, type=StandAlone, 
canonicalAddress=null, hosts=[], passives=[], arbiters=[], primary='null', 
maxDocumentSize=16777216, maxMessageSize=48000000, maxWriteBatchSize=1000, 
electionId=null, setVersion=null, tagSet=TagSet{[]}, setName='null', 
averageLatencyNanos=397839, ok=true, state=Connected, 
version=ServerVersion{versionList=[3, 2, 1]}, minWireVersion=0, 
maxWireVersion=4}
2016-02-10 13:45:22,773 INFO : org.graylog2.plugin.system.NodeId - No node 
ID file found. Generated: 3a6a0fce-2658-418b-a5a3-e188e9d10659
2016-02-10 13:45:22,890 INFO : org.graylog2.shared.buffers.InputBufferImpl 
- Message journal is enabled.
2016-02-10 13:45:22,890 ERROR: org.graylog2.shared.journal.KafkaJournal - 
Unable to start logmanager.
kafka.common.KafkaException: Failed to acquire lock on file .lock in 
~/work/git/opensource/graylog2-server/data/journal. A Kafka instance in 
another process or thread is using this directory.
at kafka.log.LogManager$$anonfun$lockLogDirs$1.apply(LogManager.scala:98) 
~[graylog.jar:?]
at kafka.log.LogManager$$anonfun$lockLogDirs$1.apply(LogManager.scala:95) 
~[graylog.jar:?]
at 
scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:241)
 
~[graylog.jar:?]
at 
scala.collection.TraversableLike$$anonfun$map$1.apply(TraversableLike.scala:241)
 
~[graylog.jar:?]
at 
scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:34)
 
~[graylog.jar:?]
at scala.collection.mutable.WrappedArray.foreach(WrappedArray.scala:34) 
~[graylog.jar:?]
at scala.collection.TraversableLike$class.map(TraversableLike.scala:241) 
~[graylog.jar:?]
at scala.collection.AbstractTraversable.map(Traversable.scala:112) 
~[graylog.jar:?]
at kafka.log.LogManager.lockLogDirs(LogManager.scala:95) ~[graylog.jar:?]
at kafka.log.LogManager.<init>(LogManager.scala:57) ~[graylog.jar:?]
at org.graylog2.shared.journal.KafkaJournal.<init>(KafkaJournal.java:261) 
[graylog.jar:?]
at 
org.graylog2.shared.journal.KafkaJournal$$FastClassByGuice$$8f50433e.newInstance(<generated>)
 
[graylog.jar:?]
at 
com.google.inject.internal.cglib.reflect.$FastConstructor.newInstance(FastConstructor.java:40)
 
[graylog.jar:?]
at 
com.google.inject.internal.DefaultConstructionProxyFactory$1.newInstance(DefaultConstructionProxyFactory.java:61)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:105)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
 
[graylog.jar:?]
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
 
[graylog.jar:?]
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:56) 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
 
[graylog.jar:?]
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
 
[graylog.jar:?]
at com.google.inject.internal.InjectorImpl$2$1.call(InjectorImpl.java:1016) 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at com.google.inject.internal.InjectorImpl$2.get(InjectorImpl.java:1012) 
[graylog.jar:?]
at 
org.graylog2.shared.buffers.InputBufferImpl.<init>(InputBufferImpl.java:72) 
[graylog.jar:?]
at 
org.graylog2.shared.buffers.InputBufferImpl$$FastClassByGuice$$790e95b9.newInstance(<generated>)
 
[graylog.jar:?]
at 
com.google.inject.internal.cglib.reflect.$FastConstructor.newInstance(FastConstructor.java:40)
 
[graylog.jar:?]
at 
com.google.inject.internal.DefaultConstructionProxyFactory$1.newInstance(DefaultConstructionProxyFactory.java:61)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:105)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
 
[graylog.jar:?]
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
 
[graylog.jar:?]
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:56) 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
 
[graylog.jar:?]
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
 
[graylog.jar:?]
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103) 
[graylog.jar:?]
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
 
[graylog.jar:?]
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
 
[graylog.jar:?]
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:56) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalInjectorCreator$1.call(InternalInjectorCreator.java:205)
 
[graylog.jar:?]
at 
com.google.inject.internal.InternalInjectorCreator$1.call(InternalInjectorCreator.java:199)
 
[graylog.jar:?]
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1092) 
[graylog.jar:?]
at 
com.google.inject.internal.InternalInjectorCreator.loadEagerSingletons(InternalInjectorCreator.java:199)
 
[graylog.jar:?]
at 
com.google.inject.internal.InternalInjectorCreator.injectDynamically(InternalInjectorCreator.java:180)
 
[graylog.jar:?]
at 
com.google.inject.internal.InternalInjectorCreator.build(InternalInjectorCreator.java:110)
 
[graylog.jar:?]
at com.google.inject.Guice.createInjector(Guice.java:96) [graylog.jar:?]
at 
org.graylog2.shared.bindings.Hk2GuiceBridgeJitInjector.create(Hk2GuiceBridgeJitInjector.java:60)
 
[graylog.jar:?]
at 
org.graylog2.shared.bindings.GuiceInjectorHolder.createInjector(GuiceInjectorHolder.java:32)
 
[graylog.jar:?]
at org.graylog2.bootstrap.CmdLineTool.setupInjector(CmdLineTool.java:377) 
[graylog.jar:?]
at org.graylog2.bootstrap.CmdLineTool.run(CmdLineTool.java:180) 
[graylog.jar:?]
at org.graylog2.bootstrap.Main.main(Main.java:44) [graylog.jar:?]
2016-02-10 13:45:22,893 INFO : org.graylog2.plugin.system.NodeId - No node 
ID file found. Generated: 6946fa6b-2443-49b8-8bd8-feff360c79b0
2016-02-10 13:45:22,894 INFO : org.graylog2.plugin.system.NodeId - No node 
ID file found. Generated: 114cbbe3-5b10-41d0-9292-b5dcba65807d
2016-02-10 13:45:22,925 INFO : org.elasticsearch.node - version[2.1.1], 
pid[59832], build[40e2c53/2015-12-15T13:05:55Z]
2016-02-10 13:45:22,925 INFO : org.elasticsearch.node - initializing ...
2016-02-10 13:45:22,929 INFO : org.elasticsearch.plugins - loaded 
[graylog-monitor], sites []
Exception in thread "main" java.lang.NoClassDefFoundError: 
com/twitter/jsr166e/LongAdder
at 
org.elasticsearch.common.metrics.CounterMetric.<init>(CounterMetric.java:28)
at 
org.elasticsearch.common.util.concurrent.EsAbortPolicy.<init>(EsAbortPolicy.java:30)
at 
org.elasticsearch.common.util.concurrent.EsExecutors.newFixed(EsExecutors.java:80)
at org.elasticsearch.threadpool.ThreadPool.rebuild(ThreadPool.java:482)
at org.elasticsearch.threadpool.ThreadPool.build(ThreadPool.java:400)
at org.elasticsearch.threadpool.ThreadPool.<init>(ThreadPool.java:232)
at org.elasticsearch.node.Node.<init>(Node.java:158)
at org.elasticsearch.node.GraylogNode.<init>(GraylogNode.java:37)
at 
org.graylog2.bindings.providers.EsNodeProvider.get(EsNodeProvider.java:53)
at 
org.graylog2.bindings.providers.EsNodeProvider.get(EsNodeProvider.java:38)
at 
com.google.inject.internal.ProviderInternalFactory.provision(ProviderInternalFactory.java:81)
at 
com.google.inject.internal.BoundProviderFactory.provision(BoundProviderFactory.java:72)
at 
com.google.inject.internal.ProviderInternalFactory.circularGet(ProviderInternalFactory.java:61)
at 
com.google.inject.internal.BoundProviderFactory.get(BoundProviderFactory.java:62)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145)
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145)
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
at 
com.google.inject.internal.BoundProviderFactory.get(BoundProviderFactory.java:61)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145)
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145)
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:56)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145)
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145)
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
at com.google.inject.internal.InjectorImpl$1.get(InjectorImpl.java:756)
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:56)
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:56)
at com.google.inject.internal.InjectorImpl$2$1.call(InjectorImpl.java:1016)
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103)
at com.google.inject.internal.InjectorImpl$2.get(InjectorImpl.java:1012)
at 
com.google.inject.multibindings.Multibinder$RealMultibinder.get(Multibinder.java:375)
at 
com.google.inject.multibindings.Multibinder$RealMultibinder.get(Multibinder.java:258)
at 
com.google.inject.internal.ProviderInternalFactory.provision(ProviderInternalFactory.java:81)
at 
com.google.inject.internal.InternalFactoryToInitializableAdapter.provision(InternalFactoryToInitializableAdapter.java:53)
at 
com.google.inject.internal.ProviderInternalFactory.circularGet(ProviderInternalFactory.java:61)
at 
com.google.inject.internal.InternalFactoryToInitializableAdapter.get(InternalFactoryToInitializableAdapter.java:45)
at 
com.google.inject.internal.SingleParameterInjector.inject(SingleParameterInjector.java:38)
at 
com.google.inject.internal.SingleParameterInjector.getAll(SingleParameterInjector.java:62)
at 
com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:104)
at 
com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:85)
at 
com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:267)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46)
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1103)
at 
com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40)
at com.google.inject.internal.SingletonScope$1.get(SingletonScope.java:145)
at 
com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41)
at com.google.inject.internal.FactoryProxy.get(FactoryProxy.java:56)
at 
com.google.inject.internal.InternalInjectorCreator$1.call(InternalInjectorCreator.java:205)
at 
com.google.inject.internal.InternalInjectorCreator$1.call(InternalInjectorCreator.java:199)
at 
com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1092)
at 
com.google.inject.internal.InternalInjectorCreator.loadEagerSingletons(InternalInjectorCreator.java:199)
at 
com.google.inject.internal.InternalInjectorCreator.injectDynamically(InternalInjectorCreator.java:180)
at 
com.google.inject.internal.InternalInjectorCreator.build(InternalInjectorCreator.java:110)
at com.google.inject.Guice.createInjector(Guice.java:96)
at 
org.graylog2.shared.bindings.Hk2GuiceBridgeJitInjector.create(Hk2GuiceBridgeJitInjector.java:60)
at 
org.graylog2.shared.bindings.GuiceInjectorHolder.createInjector(GuiceInjectorHolder.java:32)
at org.graylog2.bootstrap.CmdLineTool.setupInjector(CmdLineTool.java:377)
at org.graylog2.bootstrap.CmdLineTool.run(CmdLineTool.java:180)
at org.graylog2.bootstrap.Main.main(Main.java:44)
Caused by: java.lang.ClassNotFoundException: com.twitter.jsr166e.LongAdder
at java.net.URLClassLoader.findClass(URLClassLoader.java:381)
at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331)
at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
... 116 more



I am not sure why there is an error for graylog2-server/data/journal which 
says "A Kafka instance in another process or thread is using this directory"
How do I fix this?
I am running only one instance of graylog-server as written above (Or 
something in the config creates multiple nodes?).

Also, why am I seeing the ClassNotFoundException when I am using assembly 
plugin?

Sorry, I am new to graylog code and have only run the graylog in a VM where 
it crashed when I specified my Kafka source as an input through its browser 
UI.
Hence I have to look inside the codebase to gain more understanding for 
this crash as well as other problems in future.

If there is a guide to build graylog from sources and how to use it from 
there on, it will be great!

Thanks for your help.


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