On the irc joschi said that this notification has to be manually closed. 
It's just a leftover from the boot process I guess. 

El dilluns, 7 març de 2016 15:33:16 UTC+1, Joan va escriure:
>
> Just finished the upgrade, unfortunately not everything went as planned :(
> Shall I open an issue in github for this?
>
>
>
> El dilluns, 7 març de 2016 14:18:06 UTC+1, Jochen Schalanda va escriure:
>>
>> Hi Joan,
>>
>> you can upgrade the virtual machine with Graylog 2.0.0-alpha.4 using the 
>> Omnibus package at 
>> https://packages.graylog2.org/releases/graylog-omnibus/ubuntu/graylog_beta.deb
>> .
>>
>> The upgrade process is described at 
>> http://docs.graylog.org/en/2.0/pages/installation/graylog_ctl.html#upgrade-graylog
>> .
>>
>> Cheers,
>> Jochen
>>
>> On Monday, 7 March 2016 11:50:34 UTC+1, Joan wrote:
>>>
>>> I have been playing for a few days with the alpha4 ova, I saw that alpha 
>>> 5 has been released, altough I have nothing important stored on this 
>>> version I'd like to migrate the settings if possible (I've created some 
>>> streams and filters, etc..). Is there a way of accomplishing it?
>>>
>>>
>>>

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