I'm running Graylog 1.3.4, and the messages are coming in JSON formatted 
via a Kafka server.

I was setting up a template to handle some fields that are sent as arrays, 
but it appears that the array values get joined as a single value by the 
JSON extractor.  When I manually poll the messages out of Kafka they appear 
to be shipped as proper arrays ( "field1": ["value1","value2"] ) but when I 
look at them in Elasticsearch after they are indexed I see "field1": 
"value1, value2".  Unless I'm missing something, it looks like the JSON 
extractor in Graylog is doing this.

Is there any way to disable the join and retain the array?

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