This is what I figured out to have it back on track:

graylog-ctl stop
rm -r /var/opt/graylog/data/journal/*
graylog-ctl start

Then cycle deflector (very important) and you should have it back on track. 
Unfortunately, you will lose all the journal messages.
I tried deleting only parts of the journal (those corrupted) but that 
didn't work to reset the counter properly. Only a complete deletion worked 
for me. 

I hope it helps :)

On Friday, 26 August 2016 10:03:12 UTC-4, Obie wrote:
>
> Some commands or a link to a doc would be helpful here.
>
> On Thursday, August 4, 2016 at 12:53:46 PM UTC-4, [email protected] wrote:
>>
>> Ok so what are those commands?? Can you provide a link or something? 
>> Googling what you mention isn't very explicit and results aren't helpful. 
>> Thx
>>
>> On Tuesday, 5 April 2016 04:02:08 UTC-4, Jochen Schalanda wrote:
>>>
>>> Hi,
>>>
>>> it looks like your journal is corrupted. You can either try to recover 
>>> and repair it (see the journal-related commands in Graylog) or simply 
>>> remove the journal files from disk.
>>>
>>> Cheers,
>>> Jochen
>>>
>>> On Monday, 4 April 2016 22:56:47 UTC+2, kluch wrote:
>>>>
>>>> After "out of disk space" I removed journals, old indices, cycled 
>>>> deflector and then even deleted all indices from ES but it not helped at 
>>>> all. All graylog nodes restarted and still nothing.
>>>> I dont know from where graylog reads/displays negative (with minus) 
>>>> value of unprocessed messages.  On web it looks like this:
>>>> Processing *1* incoming and *0* outgoing msg/s. *-1,195,856,763 
>>>> unprocessed messages* are currently in the journal, in 1 segments. *1 
>>>> messages* have been appended to, and *0 messages* have been read from 
>>>> the journal in the last second.
>>>> Moreover graylog does not write to elasticsearch so only unprocessed 
>>>> messages counter is changing. Time is in sync with ntp. Version 1.3.4 
>>>> from OVA.
>>>> Any help?
>>>>
>>>

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