Try removing the entire nodes directory and restarting Elasticsearch.  ES 
should rebuild the nodes directory. 

On Wednesday, November 23, 2016 at 4:17:11 AM UTC-6, [email protected] 
wrote:
>
> We're using 2.1 OVA and ran out of space. Due to a lack of knowledge all 
> the index directories under 
> /var/opt/graylog/data/elasticsearch/graylog/nodes/0/indices/graylog_0 were 
> deleted. We now only have _state in there, before there were three 
> directories 0, 1 & 3.
>
> We can't go to System\Indices and when choosing Search we get:
> Error Message:Unable to execute 
> searchException:org.elasticsearch.action.search.SearchPhaseExecutionException
>
> The log under /var/log/graylog/server/current shows:
>
> 2016-11-23_04:51:30.13483 2016-11-23 05:51:30,134 ERROR: 
> org.graylog2.indexer.rotation.strategies.AbstractRotationStrategy - Cannot 
> perform rotation at this moment.
> 2016-11-23_04:51:40.13652 2016-11-23 05:51:40,136 ERROR: 
> org.graylog2.indexer.rotation.strategies.MessageCountRotationStrategy - 
> Unknown index, cannot perform rotation
> 2016-11-23_04:51:40.13654 org.graylog2.indexer.IndexNotFoundException: 
> Couldn't find index graylog_0
>
>
> We tried to manually cycling the deflector, but it didn't help:
> curl -XPOST *http://127.0.0.1:9000/api/system/deflector/cycle* 
> <http://127.0.0.1:9000/api/system/deflector/cycle>
>
> Multiple reboots were performed, but the situation is the same. We don't 
> care about the previous data, but would just like to get the server up and 
> running.
>
> Please assist.
>

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