Am 13.11.2013 14:51, schrieb gmx-users-requ...@gromacs.org:
Message: 4
Date: Wed, 13 Nov 2013 18:44:08 +0530
From: Nikhil Agrawal<nikhil.08...@gmail.com>
Subject: [gmx-users] How to construct mixed lipid bilayer
To:gmx-us...@gromacs.org
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<CAC4R+aJPnMFmn-RV=uggl+hnspaudyokyiijvkew0s22yrr...@mail.gmail.com>
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Dear All,
can anyone tell me how to construct mixed lipid bilayer in gromacs
id possible also provide me the command to construct the mixed bilayer
Thanks in advance
Nikhil
[Second try, my first mail seems to got lost due to mailing list migration]
Dear Nikhil,
especially for heterogeneous bilayers our MembraneEditor was developed,
you can download it here:
http://Cm2.CELLmicrocosmos.org
It is Java Webstart, so it is quite easy to use and install, but you can
also download the source code in the forum.
Here you find some videos about how to use it:
http://cellmicrocosmos.org/index.php/videos
We also use it with Gromacs. There is no pre-euqilibration done in the
MembraneEditor. But we never needed it, because the equilibration with
Gromacs works very good.
If you have further question, just let me know. A new version with a
number of improvements is coming during the next month!
Best wishes,
Björn
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