Hi, On Nov 19, 2013, at 5:53 PM, Ricardo Oliveira dos Santos Soares <rsoa...@fcfrp.usp.br> wrote:
> Hello fellow users, > is there a direct way of checking the domain decomposition viability before > running a job, thus avoiding wasting large queue times on a shared cluster > only to receive the attached error? > Is this something that can be done with aid of g_tune_pme? well, if there is a decomposition that works on a given number of nodes, then g_tune_pme will be able to find it! With g_tun_pme -s x.tpr -launch you can then directly after tuning launch your simulation (The only time 'wasted' then is the couple of minutes for tuning). Carsten > > Here's the link to this well know issue: > http://www.gromacs.org/Documentation/Errors#There_is_no_domain_decomposition_for_n_nodes_that_is_compatible_with_the_given_box_and_a_minimum_cell_size_of_x_nm > > > Thanks, > > Ricardo. > > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a > mail to gmx-users-requ...@gromacs.org. -- Dr. Carsten Kutzner Max Planck Institute for Biophysical Chemistry Theoretical and Computational Biophysics Am Fassberg 11, 37077 Goettingen, Germany Tel. +49-551-2012313, Fax: +49-551-2012302 http://www.mpibpc.mpg.de/grubmueller/kutzner http://www.mpibpc.mpg.de/grubmueller/sppexa -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
