On 12/24/13, 9:59 AM, shahab shariati wrote:
Dear gromacs users

I used  GridMAT-MD to obtain area per lipid and bilayer thickness.

I used vector for output_format in param_example file.

Based on the user guide for GridMAT-MD, when I used gnuplot:

perl convert_to_gnuplot.pl output.frame1.20x20.average_thickness.dat 20 20

I encountered with invalid command.

What is problem about that?

If you are using our latest version, the conversion script is no longer necessary as the output format is controlled when running GridMAT-MD.

If you have further questions about GridMAT-MD, you can contact me directly rather than posting to this list.



Justin A. Lemkul, Ph.D.
Postdoctoral Fellow

Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 601
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201

jalem...@outerbanks.umaryland.edu | (410) 706-7441

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