I'm doing the Martini Bilayer tutorial. Now, I'm trying to compute the bilayer thickness so I used the command
make_ndx -f confout.gro -o index.ndx to make an index for P* then I used g_density -f confout.gro -n index.ndx -o martini.xvg I looked at the graph and it's fine. but, when I tried doing it without specifying the input file g_density -n index.ndx -o martini.xvg it gives me a different graph. I'm just wondering, what input file does g_density use when you don't specify the input file? -- View this message in context: http://gromacs.5086.x6.nabble.com/question-about-g-density-tp5014454.html Sent from the GROMACS Users Forum mailing list archive at Nabble.com. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
