BS"D I just tried to build gromacs on a workstation with Centos 6.5, under /opt and got the same problem. So it's not a ROCKS issue.
I *did* succeed on a Centos 6.5 workstation where I *didn't* specify the CMAKE_INSTALL_PREFIX and "make install" put things in /usr/local. Thanks Harry Hi All, I am trying to build 4.6.5 for testing, on a Rocks 5.3 cluster (yes it needs upgrading!). I am using one of the compute nodes to do the compiling, using the following: CMAKE_PREFIX_PATH=/share/apps/fftw-3.3.2 /share/apps/cmake-2.8.12.2/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/share/apps/gromacs-4.6.5/ -DGMX_CPU_ACCELERATION=SSE2 This step is fine, as is the "make" step. But when I type "make install", it starts to copy the files to the correct place, but under "share" it starts to make many recursive gromacs subdirectories. Here is an example early on in the process Installing: /share/apps/gromacs-4.6.5/share/gromacs/./gromacs/top/amber96.ff/rna.r2b As the install proceeds, the number of gromacs/./gromacs/gromacs/gromacs...... directories keeps growing (as in the recursion level keeps going up). Any advice? ------------------------------------------------------------------------- Harry M. Greenblatt Associate Staff Scientist Dept of Structural Biology [email protected]<mailto:[email protected]> Weizmann Institute of Science Phone: 972-8-934-3625 234 Herzl St. Facsimile: 972-8-934-4159 Rehovot, 76100 Israel -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
