Hi, Justin regarding protein peptide simulation do i prepare the peptide
as i would a ligand (PRODRG) and add topology to .gro file?
Is there a tutorial for protein protein simulation?
Hope you can assist
Best regards
Ruben
On 26/04/2014 14:50, Justin Lemkul wrote:
On 4/26/14, 8:42 AM, Andrew Bostick wrote:
Dear Justin
Thanks for your reply.
This problem can be solved by changing the parameters related to file
system
?
Well, you could, but that would require reformatting your file system
for something that can handle file size > 2 GB.
If I add another RAM to my computer system, my problem solves?
No.
The simplest solutions are what I stated before - reduce your output
volume or conduct your runs in shorter intervals of time. This is a
very easy limitation to overcome, given the ability to concatenate the
output later (obviously on a different machine that supports larger
files).
-Justin
--
Gromacs Users mailing list
* Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting!
* Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
* For (un)subscribe requests visit
https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a
mail to [email protected].
