Hi Melsa, I think that your problem could belong to the fact that in the .xtc file you do not write all the frames, but every n-steps. Thus, the last frame of your xtc file is a multiple of n-step (a discrete value) and not necessary the real last one, that for sure is represented by md300.gro.
Cheers Josephine ________________________________________ Da: gromacs.org_gmx-users-boun...@maillist.sys.kth.se [gromacs.org_gmx-users-boun...@maillist.sys.kth.se] per conto di Melsa Rose Ducut [ducut_melsar...@yahoo.com] Inviato: venerdì 25 luglio 2014 6.50 A: gromacs.org_gmx-users@maillist.sys.kth.se Oggetto: [gmx-users] Re grompp and mdrun output files Hi GROMACS users, I typed the command grompp -f md300.mdp -c equi_new.gro -n dex.ndx -p topol.top -maxwarn 1 -o md300.tpr then this command mdrun -v -deffnm md300 So, I was expecting that the md300.gro output file will be same to the last frame when I load the md300.xtc on the equi_new.gro file on vmd. However, that is not the case. Can anyone please enlighten me about this? Thanks. regards, Melsa -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
