Hi sxn, Rubber bands... :) So you're talking about a CG topology. If RUBBER_BANDS is not defined, the network is not active. However, they can also be defined in the .mdp file. Furthermore, if you're talking about ElneDyn, then the model is not like regular Martini if you disable the elastic network.
Hope it helps, Tsjerk On Aug 22, 2014 7:20 PM, "shivangi nangia" <shivangi.nan...@gmail.com> wrote: > Hello All, > > I have a quick question regarding Elastic Network model. > > If the define RUBBER BANDS option is not stated in the .top file, the .itp > file (with conditions for if elastic network is on) is same as if it was > made with without any elastic network? > > Please guide. > > Thanks, > sxn > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
