Hi, Gridding the particles in x and y, and then binning in z. See Fig 2 and text of http://www.sciencedirect.com/science/article/pii/S0010465513001975
Mark On Fri, Sep 19, 2014 at 4:54 AM, Theodore Si <sjyz...@gmail.com> wrote: > Hi all, > > In the page 34 of the manual: > The Verlet cut-off scheme is implemented in a very efficient fashion based > on clusters of particles. > The simplest example is a cluster size of 4 particles. The pair list is > then constructed based on > cluster pairs. > I want to know on what condition will 4 particles be put in a cluster? Can > you explain the algorithm in a simple manner? > > BR, > Theo > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/ > Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
