On 9/22/14 10:14 AM, Yaser Hosseini wrote:
hi guys i have a problems with gromacs command .how can i can solve this problems: i install gromacs and i dont know what can i do: gmx solvate -cp 1AKI_newbox.gro -cs spc216.gro -o 1AKI_solv.gro -p topol.top No command 'gmx' found, did you mean: Command 'gcx' from package 'gcx' (universe) Command 'ngmx' from package 'gromacs' (universe) Command 'gm' from package 'graphicsmagick' (universe) Command 'gmt' from package 'libgenome-perl' (universe) gmx: command not found
You haven't configured your environment properly. http://www.gromacs.org/Documentation/Installation_Instructions#getting-access-to-gromacs-after-installation
and other problem : solvate -cp 1AKI_newbox.gro -cs spc216.gro -o 1AKI_solv.gro -p topol.top solvate: command not found
That's not a valid command. "gmx solvate" is, if you follow the instructions above. -Justin -- ================================================== Justin A. Lemkul, Ph.D. Ruth L. Kirschstein NRSA Postdoctoral Fellow Department of Pharmaceutical Sciences School of Pharmacy Health Sciences Facility II, Room 601 University of Maryland, Baltimore 20 Penn St. Baltimore, MD 21201 jalem...@outerbanks.umaryland.edu | (410) 706-7441 http://mackerell.umaryland.edu/~jalemkul ================================================== -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
