2015-03-17 14:35 GMT-03:00 Urszula Uciechowska < urszula.uciechow...@biotech.ug.edu.pl>:
> > > Hi, > > I am running MD for dsDNA-protein complex. After 50ns I observed that the > DNA is unwinding. What did go wrong? Should I have changed something in my > input file? > > You might want to send your input files, so as your force field that you have choose. It is hard to say anything without more details. Also, what do you mean by 'unwinding'? Could you be more specific? > Thank you in advance for your suggestions. > best regards > Urszula > Cheers! -- Marcelo Depólo Polêto B.Sc. Biochemistry - University of Viçosa (Brazil) -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
