Hi Mahboobeh, I recommend checking the created trajectories with gmx check. Cheers James
On Sun, Apr 26, 2015 at 12:39 AM, Ming Tang <m21.t...@qut.edu.au> wrote: > Hi,-e is end frame, -b is the start one. > > Sent from my Huawei Mobile > > Mahboobeh Eslami <mahboobeh.esl...@yahoo.com> wrote: > > hi GMx user I simulated protein-ligand comolex with gromacs. total > simulation time is 20ns. when I use trjconv for cutting the trajectory > in small subtrajectories from 10000ps to 17000ps by following command: > trjconv -f md.xtc -s md.tpr -n index.ndx -e 10000 -b 17000 > I see following text in terminal window; > Reading frame 0 time 10000.000 > Precision of md-nopbc.xtc is 0.001 (nm) > Using output precision of 0.001 (nm) > -> frame 3500 time 17000.000 -> frame 3000 time 16000.000 > I think the generated trajectory is incomplete because saved frame is > incomplete. please guide me. > Many thanks tobest > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.