Hi All,
               I want to calculate orientation angle of protein at
organic/water interface as done in the following paper:” Replica-Exchange
Molecular Dynamics Simulation of Basic Fibroblast Growth Factor Adsorption
on Hydroxyapatite”

http://pubs.acs.org/doi/abs/10.1021/jp501463r



But, I don’t know how to define interface vector as the molecules at the
interface are periodic.



Can you please guide me in this regard



Thanks



Mahreen
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