sir I am trying to make disulfide linkage between chain A and B. The command line is "pdb2gmx -f prtn.pdb -o prtn.gro -p prtn.top -ss. I have used -ss option of pdb2gmx but disufide linkage is not formed between the chains A and B. What is the possible way to form the disulfide linkage in Gromacs usind the pdb2gmx. Please resolve the issue
Thanks in Advance -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
