Hi Everyone, I have simulated a protein in 40 % methanol. Now I want to analyze the average distance between any amino acid and all the methanol molecule which comes to close to (less than 0.4 nm) that amino acid during the simulation. I tried many GROMACS analysis tool for this but I couldn't succeed. Can anybody kindly suggest me which analysis tool will be useful for me.
Thanks a lot in advance. "A society with free knowledge is better than a society with free food" Tushar Ranjan Moharana B. Tech, NIT Warangal Ph D Student, CCMB -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
