what is the computer you are using? i tried to build gromacs 4.6.7 on IBM System p7 755. It was very tedious. I had to build cmake. I think I even tried to build gnu gcc compiler. The end result was that gromacs ran very slow.
On Tue, Aug 25, 2015 at 4:08 PM, Carlos Aguni <sorla...@gmail.com> wrote: > Hello guys. > > I've compiled Gromacs-5.1 with XLC 13.1.2 + ESSL and FFTW (altivec enabled) > but > I'm getting seg. fault while trying to run it. > I'm testing it with 0000.96 workload. Here's its input: > http://pastebin.com/Ezp95b2B > > Here's the error I'm getting: > > [ubuntu:19418] *** Process received signal *** > > [ubuntu:19418] Signal: Segmentation fault (11) > > [ubuntu:19418] Signal code: Address not mapped (1) > > [ubuntu:19418] Failing at address: 0x1beefdebd > > [ubuntu:19418] [ 0] [0x3fff99cc0478] > > [ubuntu:19418] [ 1] > /lib/powerpc64le-linux-gnu/libpthread.so.0(pthread_mutex_lock+0x20) > [0x3fff961fb6b0] > > [ubuntu:19418] [ 2] mdrun_mpi() [0x10266830] > > [ubuntu:19418] [ 3] mdrun_mpi(tMPI_Thread_mutex_lock+0x30) [0x1044f9f0] > > [ubuntu:19418] [ 4] mdrun_mpi(gmx_detect_hardware+0x44) [0x1035b974] > > [ubuntu:19418] [ 5] mdrun_mpi(mdrunner+0x2cc) [0x100d6bfc] > > [ubuntu:19418] [ 6] mdrun_mpi(_Z9gmx_mdruniPPc+0x14b0) [0x100e0540] > > [ubuntu:19418] [ 7] mdrun_mpi() [0x101271fc] > > [ubuntu:19418] [ 8] > mdrun_mpi(_ZN3gmx24CommandLineModuleManager3runEiPPc+0x2f4) [0x1011bae4] > > [ubuntu:19418] [ 9] > > mdrun_mpi(_ZN3gmx24CommandLineModuleManager21runAsMainSingleModuleEiPPcPNS_26CommandLineModuleInterfaceE+0x9c) > [0x1011bf4c] > > [ubuntu:19418] [10] > > mdrun_mpi(_ZN3gmx24CommandLineModuleManager14runAsMainCMainEiPPcPFiiS2_E+0x70) > [0x1011c0e0] > > [ubuntu:19418] [11] mdrun_mpi(main+0x24) [0x100d0374] > > [ubuntu:19418] [12] /lib/powerpc64le-linux-gnu/libc.so.6(+0x24e80) > [0x3fff96054e80] > > [ubuntu:19418] [13] > /lib/powerpc64le-linux-gnu/libc.so.6(__libc_start_main+0xc4) > [0x3fff96055074] > > [ubuntu:19418] *** End of error message *** > > -------------- > > And here's the md.log: > > http://pastebin.com/GCkY136Q > > > Is there anything I can do to help clarify this problem? > > Thanks in advance! > > Carlos. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.