Hi Brett, Say I'm designing this new type of truck. Because the earth it's riding over is round, do you think I need to adjust the wheel positions on front and back to match the curvature of the earth?
Cheers, Tsjerk On Sep 13, 2015 08:52, "Brett" <brettliu...@163.com> wrote: > > Dear All, > > Suppose a membrane protein contains 10 trans-membrane helix, and as the > cell membrane is round, the upper and lower part of the 10 trans- membrane > are not horizontal as they are part of the rounded cell, will you please > introduce to me how to make the lipid bilayer in curve to parallel the > upper and lower part of the 10 tran- membrane? I only know we can pack the > membrane protein into the lipid bilayer in the way the lipid bilayer would > be perpendicular to the membrane protein. > > Yesterday I have posted a similar question but my post was not show in the > post list. > > I am looking forward to getting your reply. > > > Best regards. > > > Brett > > > > > > > > > -------- Forwarding messages -------- > From: "Machtens, Jan-Philipp" <j.macht...@fz-juelich.de> > Date: 2015-09-10 16:41:33 > To: "gromacs.org_gmx-users@maillist.sys.kth.se" < > gromacs.org_gmx-users@maillist.sys.kth.se> > Subject: Re: [gmx-users] Multiple membrane proteins in complex bilayer > (martini) > Hi Kathrin, > if I remember correctly I once did something similar with g_membed -pieces > ! > > Cheers, > ==================================== > Dr. Jan-Philipp Machtens > Institute of Complex Systems - Zelluläre Biophysik (ICS-4) > Forschungszentrum Jülich, Germany > Telefon: 02461 616467 > ==================================== > > ________________________________________ > Date: Thu, 10 Sep 2015 01:25:00 +0200 > From: Kathrin Hadasch <kh...@web.de> > To: gromacs.org_gmx-users@maillist.sys.kth.se > Subject: [gmx-users] Multiple membrane proteins in complex bilayer > (martini) > Message-ID: <55f0bfcc.7060...@web.de> > Content-Type: text/plain; charset=ISO-8859-15; format=flowed > > Hey you all, > I'm searching for a way to insert and embed multiple(!) copies of the > same protein in a complex, presimulated membrane patch (all martini-cg). > I've tryed lambada for insertion, but I couldn't get it to work with > more than one protein. I've tried to translate the protein to a (4 4 0) > vector with editconf in the lambada script, but I get following error: > Modification of non-creatable array value attempted, subscript -6 at > /home/lambada/modules/protein.pm line 281. > For insertion via vmd, I have no clue how to generate a psf file for > martini-lipids. > Any suggestions how I could make it work? > Best regards and thanks in advance, > Kathrin > > > > ------------------------------------------------------------------------------------------------ > > ------------------------------------------------------------------------------------------------ > Forschungszentrum Juelich GmbH > 52425 Juelich > Sitz der Gesellschaft: Juelich > Eingetragen im Handelsregister des Amtsgerichts Dueren Nr. HR B 3498 > Vorsitzender des Aufsichtsrats: MinDir Dr. Karl Eugen Huthmacher > Geschaeftsfuehrung: Prof. Dr.-Ing. Wolfgang Marquardt (Vorsitzender), > Karsten Beneke (stellv. Vorsitzender), Prof. Dr.-Ing. Harald Bolt, > Prof. Dr. Sebastian M. Schmidt > > ------------------------------------------------------------------------------------------------ > > ------------------------------------------------------------------------------------------------ > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > > > > > > > > > > > > > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.