Should have asked for the CMakeCache file too, could you post that to a file sharing service?
If you happen to have GMX_SIMD other than SSE2, that would explain the issue - although I can't imagine why would the instruction set detection fail. Do you get an "illegal instruction" error if you e.g. try to run "gmx -version" from the build tree? Cheers, -- Szilárd On Fri, Oct 2, 2015 at 11:12 PM, Simon Dürr <simon.du...@uni-konstanz.de> wrote: > Sure. > > >cat /proc/cpuinfo > > > > processor : 0 > > vendor_id : GenuineIntel > > cpu family : 6 > > model : 69 > > model name : Intel(R) Core(TM) i7-4550U CPU @ 1.50GHz > > stepping : 1 > > microcode : 0x19 > > cpu MHz : 2095.205 > > cache size : 6144 KB > > physical id : 0 > > siblings : 1 > > core id : 0 > > cpu cores : 1 > > apicid : 0 > > initial apicid : 0 > > fdiv_bug : no > > f00f_bug : no > > coma_bug : no > > fpu : yes > > fpu_exception : yes > > cpuid level : 5 > > wp : yes > > flags : fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat > pse36 clflush mmx fxsr sse sse2 rdtscp constant_tsc pni monitor ssse3 > > bugs : > > bogomips : 4190.41 > > clflush size : 64 > > cache_alignment : 64 > > address sizes : 39 bits physical, 48 bits virtual > > Cheers, > Simon > > 2015-10-02 5:36 GMT-04:00 Szilárd Páll <pall.szil...@gmail.com>: > > Hi, > > > > Can you share the CPUID flags shown in /proc/cpuinfo? > > > > > > -- > > Szilárd > > > > On Thu, Oct 1, 2015 at 7:03 PM, Simon Dürr <simon.du...@uni-konstanz.de> > > wrote: > > > >> I used this: > >> > >> > cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=OFF > >> -DGMX_USE_RDTSCP=OFF > >> > >> But Still: > >> Test project /home/simon/gromacs-5.0.6/build > >> Start 1: TestUtilsUnitTests > >> 1/15 Test #1: TestUtilsUnitTests ...............***Exception: > >> Illegal 0.29 sec > >> > >> Start 2: PreprocessingTests > >> 2/15 Test #2: PreprocessingTests ...............***Exception: > >> Illegal 0.23 sec > >> > >> Start 3: CommandLineUnitTests > >> 3/15 Test #3: CommandLineUnitTests .............***Exception: > >> Illegal 0.36 sec > >> > >> Start 4: FFTUnitTests > >> 4/15 Test #4: FFTUnitTests .....................***Exception: > >> Illegal 0.32 sec > >> > >> Start 5: RandomUnitTests > >> 5/15 Test #5: RandomUnitTests ..................***Exception: > >> Illegal 0.25 sec > >> > >> Start 6: OnlineHelpUnitTests > >> 6/15 Test #6: OnlineHelpUnitTests ..............***Exception: > >> Illegal 0.30 sec > >> > >> Start 7: OptionsUnitTests > >> 7/15 Test #7: OptionsUnitTests .................***Exception: > >> Illegal 0.31 sec > >> > >> Start 8: UtilityUnitTests > >> 8/15 Test #8: UtilityUnitTests .................***Exception: > >> Illegal 0.26 sec > >> > >> Start 9: FileIOTests > >> 9/15 Test #9: FileIOTests ......................***Exception: > >> Illegal 0.31 sec > >> > >> Start 10: SimdUnitTests > >> 10/15 Test #10: SimdUnitTests ....................***Exception: > >> Illegal 0.30 sec > >> > >> Start 11: LegacyToolsTests > >> 11/15 Test #11: LegacyToolsTests .................***Exception: > >> Illegal 0.30 sec > >> > >> Start 12: AnalysisDataUnitTests > >> 12/15 Test #12: AnalysisDataUnitTests ............***Exception: > >> Illegal 0.23 sec > >> > >> Start 13: SelectionUnitTests > >> 13/15 Test #13: SelectionUnitTests ...............***Exception: > >> Illegal 0.35 sec > >> > >> Start 14: TrajectoryAnalysisUnitTests > >> 14/15 Test #14: TrajectoryAnalysisUnitTests ......***Exception: > >> Illegal 0.35 sec > >> > >> Start 15: MdrunTests > >> 15/15 Test #15: MdrunTests .......................***Exception: > >> Illegal 0.28 sec > >> > >> > >> 0% tests passed, 15 tests failed out of 15 > >> > >> Label Time Summary: > >> GTest = 3.63 sec > >> IntegrationTest = 0.81 sec > >> UnitTest = 3.63 sec > >> > >> Total Test time (real) = 4.61 sec > >> > >> > >> The following tests FAILED: > >> 1 - TestUtilsUnitTests (ILLEGAL) > >> 2 - PreprocessingTests (ILLEGAL) > >> 3 - CommandLineUnitTests (ILLEGAL) > >> 4 - FFTUnitTests (ILLEGAL) > >> 5 - RandomUnitTests (ILLEGAL) > >> 6 - OnlineHelpUnitTests (ILLEGAL) > >> 7 - OptionsUnitTests (ILLEGAL) > >> 8 - UtilityUnitTests (ILLEGAL) > >> 9 - FileIOTests (ILLEGAL) > >> 10 - SimdUnitTests (ILLEGAL) > >> 11 - LegacyToolsTests (ILLEGAL) > >> 12 - AnalysisDataUnitTests (ILLEGAL) > >> 13 - SelectionUnitTests (ILLEGAL) > >> 14 - TrajectoryAnalysisUnitTests (ILLEGAL) > >> 15 - MdrunTests (ILLEGAL) > >> Errors while running CTest > >> make[3]: *** [CMakeFiles/run-ctest] Error 8 > >> make[2]: *** [CMakeFiles/run-ctest.dir/all] Error 2 > >> make[1]: *** [CMakeFiles/check.dir/rule] Error 2 > >> make: *** [check] Error 2 > >> > >> 2015-10-01 11:00 GMT-04:00 Szilárd Páll <pall.szil...@gmail.com>: > >> > My guess is that you need to turn off RDTSCP: > >> > > >> > http://www.gromacs.org/Documentation/Installation_Instructions_5.0#portability-aspects > >> > > >> > > >> > > >> > -- > >> > Szilárd > >> > > >> > On Thu, Oct 1, 2015 at 4:36 PM, Simon Dürr < > simon.du...@uni-konstanz.de> > >> > wrote: > >> > > >> >> I have problems installing Gromacs on a VirtualBox machine. > >> >> > >> >> Stats of the System: > >> >> Lubuntu 32bit, 14.04 LTS > >> >> build-essential and cmake are installed. > >> >> > >> >> I follow the instructions: > >> >> > tar xfz gromacs-5.0.6.tar.gz > >> >> > cd gromacs-5.0.6 > >> >> > mkdir build > >> >> > cd build > >> >> > cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=OFF > >> >> > make > >> >> > make check > >> >> > sudo make install > >> >> > source /usr/local/gromacs/bin/GMXRC > >> >> > >> >> However make check gives me the following errors and I can't figure > out > >> >> why. > >> >> I can install Gromacs after and executing gmx "appname" works with no > >> >> errors. > >> >> > >> >> Do you have ideas why? > >> >> > >> >> > 0% tests passed, 15 tests failed out of 15 > >> >> > Label Time Summary: > >> >> > GTest = 3.54 sec > >> >> > IntegrationTest = 0.88 sec > >> >> > UnitTest = 3.54 sec > >> >> > Total Test time (real) = 4.58 sec > >> >> > The following tests FAILED: > >> >> > 1 - TestUtilsUnitTests (ILLEGAL) > >> >> > 2 - PreprocessingTests (ILLEGAL) > >> >> > 3 - CommandLineUnitTests (ILLEGAL) > >> >> > 4 - FFTUnitTests (ILLEGAL) > >> >> > 5 - RandomUnitTests (ILLEGAL) > >> >> > 6 - OnlineHelpUnitTests (ILLEGAL) > >> >> > 7 - OptionsUnitTests (ILLEGAL) > >> >> > 8 - UtilityUnitTests (ILLEGAL) > >> >> > 9 - FileIOTests (ILLEGAL) > >> >> > 10 - SimdUnitTests (ILLEGAL) > >> >> > 11 - LegacyToolsTests (ILLEGAL) > >> >> > 12 - AnalysisDataUnitTests (ILLEGAL) > >> >> > 13 - SelectionUnitTests (ILLEGAL) > >> >> > 14 - TrajectoryAnalysisUnitTests (ILLEGAL) > >> >> > 15 - MdrunTests (ILLEGAL) > >> >> > Errors while running CTest > >> >> > make[3]: *** [CMakeFiles/run-ctest] Error 8 > >> >> > make[2]: *** [CMakeFiles/run-ctest.dir/all] Error 2 > >> >> > make[1]: *** [CMakeFiles/check.dir/rule] Error 2 > >> >> > make: *** [check] Error 2 > >> >> -- > >> >> Gromacs Users mailing list > >> >> > >> >> * Please search the archive at > >> >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > >> >> posting! > >> >> > >> >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> >> > >> >> * For (un)subscribe requests visit > >> >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users > or > >> >> send a mail to gmx-users-requ...@gromacs.org. > >> >> > >> > -- > >> > Gromacs Users mailing list > >> > > >> > * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > >> posting! > >> > > >> > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > > >> > * For (un)subscribe requests visit > >> > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > >> send a mail to gmx-users-requ...@gromacs.org. > >> -- > >> Gromacs Users mailing list > >> > >> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > >> posting! > >> > >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > >> * For (un)subscribe requests visit > >> https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > >> send a mail to gmx-users-requ...@gromacs.org. > >> > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.