A few clairfying questions: 1) What is the size of the system? 2) What is your frame saving rate? 3) Are you using a GPU? What about MPI or OpenMP?
60ns a day (what 5ns/2hours) is not unheard of given a reasonable system size and GPU acceleration. If you are curious about the performance you can always check your log files and see what is going on. -Micholas =================== Micholas Dean Smith, PhD. Post-doctoral Research Associate University of Tennessee/Oak Ridge National Laboratory Center for Molecular Biophysics ________________________________________ From: gromacs.org_gmx-users-boun...@maillist.sys.kth.se <gromacs.org_gmx-users-boun...@maillist.sys.kth.se> on behalf of Sana Saeed <bioinformatic.l...@yahoo.com> Sent: Wednesday, October 28, 2015 11:24 PM To: gromacs.org_gmx-users Subject: [gmx-users] 5ns simulation in 2 hours hi gmx users!i run 5 ns simulation and it took only 2 hours..is it possible? its showing no error.. Regards Autumn -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.