On 10/29/15 12:16 AM, Chunlei ZHANG wrote:
Dear All, I was trying to compiling Gromscs 5.1 on a cluster with with two 10-core Intel Xeon E5-2600 v3(Haswell) on each node. The command with cmake: cmake .. -DCMAKE_C_COMPILER=mpiicc \ -DCMAKE_CXX_COMPILER=mpiicpc \ -DGMX_MPI=on -DGMX_OPENMP=on \ -DGMX_GPU=off \ -DGMX_SIMD=AVX2_256 \ -DGMX_DOUBLE=off \ -DCMAKE_INSTALL_PREFIX=/my/path/GMX5.1 \ -DBUILD_SHARED_LIBS=off \ -DGMX_FFT_LIBRARY=MKL Then, I execute make, but received the following message: "make[2]: warning: Clock skew detected. Your build may be incomplete." Then, make install: In the bin folder, I only found these executables: demux.pl gmx-completion.bash gmx-completion-gmx_mpi.bash gmx_mpi GMXRC GMXRC.bash GMXRC.csh GMXRC.zsh xplor2gmx.pl Could anyone suggest possible solution to this?
Solution to what? There is only one binary in version 5.1, called "gmx" (or "gmx_mpi" in the case of an MPI build).
-Justin -- ================================================== Justin A. Lemkul, Ph.D. Ruth L. Kirschstein NRSA Postdoctoral Fellow Department of Pharmaceutical Sciences School of Pharmacy Health Sciences Facility II, Room 629 University of Maryland, Baltimore 20 Penn St. Baltimore, MD 21201 jalem...@outerbanks.umaryland.edu | (410) 706-7441 http://mackerell.umaryland.edu/~jalemkul ================================================== -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
