Hi everybody,
I want to convert the topology and coordinate files fromamber to gromacs format. I used acpype bu it didn’t work properly (actually mysystem is consisted of some lipids in a water-protein system but when I convertthe files via acpype, the backbone is consisted of a mass solvated in water,indeed in the converted topology file in the molecule types section the proteinand lipids assumed to be one mass and two molecule types exist: the water andthat mass), also I downloaded the “ambconv.tgz” from gromacs website but I don’tknow how to work with that. Can you please help me how to conver my files? Thank you, Mohammad. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
