You can try using editconf with resnr 1. On Nov 28, 2015 3:57 AM, "Peter Stern" <peter.st...@weizmann.ac.il> wrote:
> AFAIK pdb2gmx doesn't care about the atom numbers in your pdb file since > in any case it reorders them and renumbers them after adding hydrogen > atoms. Did you try it? > > Regards, > Peter > > Sent from my iPad > > > On 27 בנוב׳ 2015, at 22:28, masoud keramati <keramati.ma3...@gmail.com> > wrote: > > > > Hello > > > > I want to simulate two proteins and need to combine these two pdb files > in > > one. > > important thing is the atom number. if combine with cat command it gives > a > > file that contain two atom with the same atom and residue number that > will > > make an error in simulation. > > is there exist any way to combine these two pdb files to solve this > problem? > > I mean if first pdb finish with atom number n and residue number m then > > next pdb is start with atom number n+1 and residue number m+1. > > > > tnx > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
