Hi, GROMACS works correctly if you have permissions to read and write and enough space to do so. But I expect that you can't try to run from $WORK using mdrun -cpi $HOME/old.cpt if $HOME is full.
I suggest you consult the docs for the cluster, and consult your sysadmins for any help with your script. Mark On Sun, Feb 14, 2016 at 7:17 PM Ray Chao <xiaoain...@gmail.com> wrote: > Hi, Mark, > > Thank you for your response. I am not sure if this is the right way to > reply, because I cannot see the content of gmx maillist emails. > > I am running in my own space. Here is the story. Everybody has a $HOME and > $WORK directory on the cluster. The $HOME is for permanent storage with > 100GB disk space and $WORK is for temporary storage with 1TB storage. > Initially I was running my case on $HOME. Since the files begin to pile up, > the space is running out, I turned to the $WORK directory. At that time, I > began to receive such an error message. Even I then move my cases back to > $HOME, it did not work either. > > Best regards, > Lei Zhao > Ph.D Student in Mechanical Engineering, Virginia Tech > Mobile:+1-540-750-9042 > -- > Gromacs Users mailing list > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.