Dear all, I'm desperetly looking for help to generate the topology of my hem protein.
I'm using CHARMM as a force field and apparently PDB2gmx assigns dihedrals that should not exist and it's complicated to verify everything. Justin suggested using CHARMM-GUI, I followed a tutorial that I found on line (http://cermm.concordia.ca/workshopDocs/CHARMM/Lague.pdf) in order to build my system, I'm in the final step, adding the Hem group to my protein but I don't know how to do it and I don't know if all the steps went well or not. Any advices, HELP please!! I'll really appreciate your help, time and patience! Regards. Zeinbe. -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.