Hello Everyone, I received an error (shown below) while trying to run "Adding ion" step during Protein-membrane simulation. Any advice or suggestions will be greatly appreciated.
The steps utilized proior to "Adding Ions" are mention below: > pdb2gmx -f KALP-15_princ.pdb -o KALP-15_processed.gro -ignh -ter -water spc Topology file updated (as indicated in tutorial) > editconf -f dppc128.pdb -o dppc128.gro > grompp -f minim.mdp -c dppc128.gro -p topol_dppc.top -o em.tpr > cat KALP-15_processed.gro dppc128_whole.gro > system.gro > editconf -f system.gro -o system_box.gro -box 6.41840 6.44350 10.59650 > solvate -cp system_box.gro -cs spc216.gro -o system_box_sol.gro > -- *Bijen* -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
