Dear Grimaces Users, When I run a simulation with NPT under periodic boundary condition, the output file (confout.gro) is obtained with shrinked box due to the external pressure. Because of the periodic boundary condition, some molecules might be cross the boundary appearing the other side of box as shown in Figure 1 attached.
Is there a way to reformat the output file as shown in Figure 2? I would like all molecules to have continuous molecules. Thank you. Best regards, Changowon Jang
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