On 9/20/16 11:33 AM, Marta Wisniewska wrote:
I have problem with ranks:
There is no domain decomposition for 288 ranks that is compatible with the
given box and a minimum cell size of 1.02425 nm
Change the number of ranks or mdrun option -rcon or -dds or your LINCS
I change the size of box, but it doesn't help. Do you have any suggestion
of this job?
Your system is too small to be efficiently decomposed over that many ranks. Use
Justin A. Lemkul, Ph.D.
Ruth L. Kirschstein NRSA Postdoctoral Fellow
Department of Pharmaceutical Sciences
School of Pharmacy
Health Sciences Facility II, Room 629
University of Maryland, Baltimore
20 Penn St.
Baltimore, MD 21201
jalem...@outerbanks.umaryland.edu | (410) 706-7441
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