Hi I hope you are very well
I designed one protein by Homology modelling approach. I want to use this protein as receptor in docking process. I think that, before docking process, initial designed protein must be refined by MD simulation. How much time should this simulation be done for refinement of homology-based protein structure. What parameters should be monitored to ensure that the time simulation is sufficient. thanks for your help best -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
