my name is Matilde. This is my first time using GROMACS. I'm switching from
AMBER to GROMACS however I'm having some trouble reproducing my system:
In AMBER, I'm working with a 5000 residues protein, a water box (TIP3) of
12A, roughly 1.5 million atoms total. I tried building the same system in
GROMACS, cubic box, 12A, same protein, however I obtain a 2.5 million atoms
system. Is there a way I can reduce the number of atoms?
Thank you in advance,
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