Hi all I am running a simulation with martini lipids with the lipids initially placed randomly together with W solvent in a box. What pressure control do I apply?
I have tried isotropic, since the system indeed is isotropic initially, but I don't see formation of a bilayer, rather multiple layers of lipids and/or cylindrical weird structures. Going anisotropic always deforms the box, it becomes longer and longer in z until almost infinity. Semi-isotropic is correct for bilayers obviously, but can I use that before the bilayer is formed? Thanks /PK -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
