Hi follow these steps:
1)sudo wget ftp://ftp.cmbi.ru.nl/pub/software/dssp/dssp-2.2.1-linux-i386 -O /usr/local/bin/dssp 2)sudo chmod a+x /usr/local/bin/dssp 3)export DSSP=/usr/local/bin/dssp On Fri, Feb 3, 2017 at 3:15 PM, Mark Abraham <mark.j.abra...@gmail.com> wrote: > Hi, > > On Fri, Feb 3, 2017 at 7:52 AM soumadwip ghosh <soumadwipgh...@gmail.com> > wrote: > > > Hello all, > > > > I am trying to install dssp in centos 7 for determining the secondary > > structure of a protein in combination with do_dssp. These are the steps I > > followed: > > > > 1. installation directory : /opt/apps/dssp/dssp-2.2.1/ > > > > 2. but there is no dssp executable in the dssp-2.2.1 directory > > > > 3. however there was a dssp.o file in the obj directory of dssp-2.2.1 > > > > 4. we renamed the dssp.o file to dssp and moved it to dssp-2.2.1 > directory > > > > That cannot possibly work. Please make sure you are following the dssp > installation instructions. > > Mark > > > > 5. ln -s /opt/apps/dssp/dssp2.2.1/dssp /usr/local/bin/ > > > > 6. export dssp=/usr/local/bin/dssp > > > > > > > > but inspite of executing the above steps, when we run the do_dssp command > > we get > > the following error : Fatal error: DSSP executable > > (usr/local/bin/dssp/dssp) does > > not exist (use setenv DSSP) > > > > PS. we are using bash > > > > > > I have read various threads on the errors related to do_dssp but could > > not find a solution. > > > > Any kind of help would be appreciated. > > > > > > Best, > > > > Soumadwip Ghosh > > > > Research Associate > > > > Indian Institute of Technology Bombay > > > > India > > -- > > Gromacs Users mailing list > > > > * Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before > > posting! > > > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > * For (un)subscribe requests visit > > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > > send a mail to gmx-users-requ...@gromacs.org. > > > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/ > Support/Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.