Dear gromacs user, I practiced of MD stimulation with LysoZyme tutorial. Now, They used 15: OPLS-AA/L force field and also i saved all *.mdp* file (ions. mdp, md.mdp, nvt.mdp, npt.mdp, minim.mdp, etc.) as given in tutorial and successfully performed MD stimulation.
Now, I have want to study my protein. I found force field 9 to 14 are reported for my protein in literature. Further, I also tried it and found "Residue 'ZN' not found in residue topology database" only for force field 15 (OPLS-AA/L force field), not for any other force field (9 to 14). *Now, I have two questions.* *1) Can i use this file for stimulation study with other force field (9 to 14)? If not, from where i get them?* *2) Also want to study MD at higher temperature, still Can i use tutorial .mdp files? or what informations i have to change in files (.mdp)* Can any one tell me what to do? -- Regards, Chintan Bhagat Research scholar, V.N.S.G.U, India -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to [email protected].
