Hello,
I try to visualize a .gro file from Martini simulation. However, I
noticed that the lipids always above the water molecule and my protein
split into two. Even after I run the following command:
gmx trjconv -s dppc-md.tpr -f dppc-md.gro -pbc whole -dump 0 -o
dppc-md-pbc.gro
The issue is still there.
Here is a snapshot for my problem:
https://www.dropbox.com/s/qvoxa70tr625w46/pbc.jpg?dl=0
Does anybody have any idea how to solve this problem?
Thank you very much.
Albert
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