Hi
I've looked all through the GROMACS documentation re actions of the PDB2GMX 
command but I cant' see a reference to why it appears to change the coordinates 
of the input .pdb file (basically decreasing them by an order of magnitude). Is 
this normal? When grepping out your docked ligands this causes problems later 
when you put the ligand coordinates back in prior to creating the box, having 
to then alter those coordinates in the same manner. I am obviously missing some 
important information!  (I using Gromacs 5.0.4)
Kind regards & many thanks/Anna


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