Hi all,
I am trying to select all the glycine molecules with 0.5nm of my protein. I tried both of these commands I got from the gromacs website: gmx select -f output.gro -select "Close to protein" resname Glyci and within 0.5 of group "Protein"' -ofpdb gmx select -f output.xtc -s output.tpr (my converted input file) -select "Close to protein" resname Glyci and within 0.5 of group "Protein"' -ofpdb Nothing comes up when I enter them. Please could someone help me with this? Akash -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
