I had a crash in my system while running a simulation. After that, I used this
command to continue: mdrun -s md_0_1.tpr -cpi md_0_1.cpt -append
I had two .cpt files from the last simulation ( md_0_1.cpt and md_0_1_prev.cpt)
and both were saved at the same time. So, I do not know whether I used the
right .cpt file or not. At the end of the continuing run, I received new
trajectory file which contains the small section of the rest of the simulation
after the crash not whole the simulation, and it was not written on the last
trajectory file (the last trajectory file remained unchanged). However, I used
-append option to append the new output to the existing files. How can I append
the new trajectory file to the last one to have a unique trajectory?
By the way, I used Gromacs version 5.1.3 for the first simulation before the
crash and 5.1.4 for after the crash.
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