Hello gmx-users! I want to simulate a membrane protein, where it sets across the membrane (means that some of the protein's region lays outside the membrane and is water exposed). Obviously, the protein will be experiencing two different environments like membrane and water (heterogeneous condition) during the simulation.
Will it please be recommended to follow the* Justin tutorial *for membrane protein simulation ( http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/index.html) or I should make some modifications to this tutorial? Also, please suggest me whether this kind of simulation in heterogeneous condition is worth enough to get reliable data or not? Thanks -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.
