https://drive.google.com/file/d/0BxGqxeGwTDLbLWJ5SExDblVhRFU /view?usp=sharing&ts=59be86ad
On Sun, Sep 17, 2017 at 6:35 PM, Justin Lemkul <jalem...@vt.edu> wrote: > > > On 9/17/17 1:22 AM, Vidya R wrote: > >> My log file is provided in the link below >> >> Can you please look into it and let me know why the error arises? >> >> I am feeding my commands in SGE cluster. When I run it in my login node, >> gmx mdrun -v -deffnm eql runs well >> >> >> But, through qsub command, (with 8 processors) It says, >> >> mpirun noticed that process rank 7 with PID 19160 on node >> compute-0-28.local exited on signal 11 (Segmentation fault). >> >> Please help me. >> >> I am unable to figure out, as to whether the problem is with the version >> of >> gromacs or the method of compiling. >> >> >> https://drive.google.com/file/d/0BxGqxeGwTDLbQW9OZDFuM1doUlU >> /view?usp=sharing >> >> > I am unable to view the file, as it says I do not have permission. Please > change the access restrictions on it. > > -Justin > > -- > ================================================== > > Justin A. Lemkul, Ph.D. > Assistant Professor > Virginia Tech Department of Biochemistry > > 303 Engel Hall > 340 West Campus Dr. > Blacksburg, VA 24061 > > jalem...@vt.edu | (540) 231-3129 > http://www.biochem.vt.edu/people/faculty/JustinLemkul.html > > ================================================== > -- > Gromacs Users mailing list > > * Please search the archive at http://www.gromacs.org/Support > /Mailing_Lists/GMX-Users_List before posting! > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > * For (un)subscribe requests visit > https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or > send a mail to gmx-users-requ...@gromacs.org. > -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.