On 11/13/17 5:24 AM, Faezeh Pousaneh wrote:
Hi,
Unfortunately I do not find in Gromos literature what is the third number
in front of
bond stretching parameters, e.g 1200 below:
:

; ICB(H)[N]    CB[N] B0[N]
#define gb_5        0.1230  1.6600e+07
; C  - O        1200

someone please tell me,

It's an integer code from the original GROMOS parameter files. Note that it is on a comment line and thus serves no function in GROMACS.

-Justin

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Justin A. Lemkul, Ph.D.
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Virginia Tech Department of Biochemistry

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