Dear, all I have one query regarding pulling of si-rNA (having chain-a and chain-b). Here, I am pulling 3' end of chain-a and fixed 3' end of chain-b (diagonally apposite ). I am doing pulling using gromacs with constant velocity rate using Umbrella sampling. after finalization of pulling before umbrella sampling, we got two output file i.e.
1- force/time (f= force) 2- x/time (x= pulling distance between two ends) in first case of f/t, initially force increases and then after some time, force starts to decrease (looks like gaussian curve, not exactly gaussian, because lot of fluctuation). So my question is that, what this peak (of increasing and decreasing curve ) represents. can I define this peak as a rupture force or breaking force of two strands of si-rna or something else. -- * Rakesh Kumar Mishra* * (RA)CSD SINP Kolkata, India* *E-mail - rakesh.mis...@saha.ac.in <rakesh.mis...@saha.ac.in> * *Phone n. +91 9473662491, +91877749632* -- Gromacs Users mailing list * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/GMX-Users_List before posting! * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists * For (un)subscribe requests visit https://maillist.sys.kth.se/mailman/listinfo/gromacs.org_gmx-users or send a mail to gmx-users-requ...@gromacs.org.