In a given system with several chains, after minimisation the chains are 
split up by PBC.   Using trjconv on this file to put all the chains back into a 
unified complex, the Ions are converted to water molecules.
The input file (-f) and the reference file (-s) had waters and Ions (sodium and 
chloride), but the output file has only waters (waters have replaced the ions). 
  Seems to be a bug.



Harry M. Greenblatt
Associate Staff Scientist
Dept of Structural Biology  <>
Weizmann Institute of Science        Phone:  972-8-934-6340
234 Herzl St.                        Facsimile:   972-8-934-3361
Rehovot, 7610001

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